Package: metaConvert 1.0.2

metaConvert: An Automatic Suite for Estimation of Various Effect Size Measures

Automatically estimate 11 effect size measures from a well-formatted dataset. Various other functions can help, for example, removing dependency between several effect sizes, or identifying differences between two datasets. This package is mainly designed to assist in conducting a systematic review with a meta-analysis but can be useful to any researcher interested in estimating an effect size.

Authors:Corentin J. Gosling [aut, cre], Samuele Cortese [aut], Marco Solmi [aut], Belen Haza [aut], Eduard Vieta [aut], Richard Delorme [aut], Paolo Fusar-Poli [aut], Joaquim Radua [aut]

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metaConvert.pdf |metaConvert.html✨
metaConvert/json (API)
NEWS

# Install 'metaConvert' in R:
install.packages('metaConvert', repos = c('https://corentinjgosling.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.18 score 3 scripts 588 downloads 77 exports 84 dependencies

Last updated 1 days agofrom:b5e3aba945. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 18 2024
R-4.5-winNOTENov 18 2024
R-4.5-linuxNOTENov 18 2024
R-4.4-winNOTENov 18 2024
R-4.4-macNOTENov 18 2024
R-4.3-winNOTENov 18 2024
R-4.3-macNOTENov 18 2024

Exports:aggregate_dfcompare_dfconvert_dfdata_extraction_sheetes_from_2x2es_from_2x2_propes_from_2x2_sumes_from_ancova_fes_from_ancova_f_pvales_from_ancova_md_cies_from_ancova_md_pvales_from_ancova_md_sdes_from_ancova_md_sees_from_ancova_means_cies_from_ancova_means_sdes_from_ancova_means_sd_pooled_adjes_from_ancova_means_sd_pooled_crudees_from_ancova_means_sees_from_ancova_tes_from_ancova_t_pvales_from_anova_fes_from_anova_pvales_from_beta_stdes_from_beta_unstdes_from_cases_timees_from_chisqes_from_chisq_pvales_from_cohen_des_from_cohen_d_adjes_from_etasqes_from_etasq_adjes_from_fisher_zes_from_hedges_ges_from_md_cies_from_md_pvales_from_md_sdes_from_md_sees_from_mean_change_cies_from_mean_change_pvales_from_mean_change_sdes_from_mean_change_sees_from_means_cies_from_means_ci_pre_postes_from_means_sdes_from_means_sd_pooledes_from_means_sd_pre_postes_from_means_sees_from_means_se_pre_postes_from_med_min_maxes_from_med_min_max_quartses_from_med_quartses_from_ores_from_or_cies_from_or_pvales_from_or_sees_from_paired_fes_from_paired_f_pvales_from_paired_tes_from_paired_t_pvales_from_pearson_res_from_phies_from_plot_ancova_meanses_from_plot_meanses_from_pt_bis_res_from_pt_bis_r_pvales_from_rr_cies_from_rr_pvales_from_rr_sees_from_student_tes_from_student_t_pvales_from_user_adjes_from_user_crudees_variab_from_means_cies_variab_from_means_sdes_variab_from_means_sesee_input_datasummary.metaConvert

Dependencies:backportsbase64encbitbit64bslibcachemcellrangercheckmateclicliprcompareDFcpp11crayoncurldata.tabledigestdplyrestimrawevaluatefansifastmapfontawesomeforcatsforeignfsgenericsgluehavenhighrhmshtmlTablehtmltoolshtmlwidgetsjquerylibjsonliteknitrlatticelifecyclemagrittrmathjaxrMatrixmemoisemetadatmetaformimemvtnormnlmenumDerivopenxlsxpbapplypillarpkgconfigprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6rappdirsRcppreadrreadxlrematchriorlangrmarkdownrstudioapisassstringistringrtibbletidyrtidyselecttinytextzdbutf8vctrsvroomwithrwritexlxfunyamlzip

Vignette 1. General guidance about metaConvert

Gosling CJ, Cortese S, Solmi M, Haza B, Vieta E, Delorme R, Fusar-Poli P, Radua J

Rendered fromTutorial.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2024-11-17
Started: 2024-03-01

Readme and manuals

Help Manual

Help pageTopics
metaConvert: An R Package Dedicated to Automated Effect Size CalculationsmetaConvert-package
Aggregate a dataframe containing dependent effect sizesaggregate_df
Flag the differences between two dataframes.compare_df
Automatically compute effect sizes from a well formatted datasetconvert_df
Data extraction sheet generatordata_extraction_sheet
Fictitious dataset 1df.compare1
Fictitious dataset 2df.compare2
Meta-analytic dataset inspired from Haza and colleagues (2024)df.haza
Short version of the df.haza datasetdf.short
Convert a 2x2 table into several effect size measureses_from_2x2
Convert the proportion of occurrence of a binary event in two independent groups into several effect size measureses_from_2x2_prop
Convert a table with the number of cases and row marginal sums into several effect size measureses_from_2x2_sum
Convert a F-statistic obtained from an ANCOVA model into several effect size measures.es_from_ancova_f
Convert a two-tailed p-value of an ANCOVA t-test into several effect size measures.es_from_ancova_f_pval
Convert an adjusted mean difference and adjusted standard deviation between two independent groups obtained from an ANCOVA model into several effect size measureses_from_ancova_md_ci
Convert an adjusted mean difference and adjusted standard deviation between two independent groups obtained from an ANCOVA model into several effect size measureses_from_ancova_md_pval
Convert an adjusted mean difference and adjusted standard deviation between two independent groups obtained from an ANCOVA model into several effect size measureses_from_ancova_md_sd
Convert an adjusted mean difference and standard error between two independent groups obtained from an ANCOVA model into several effect size measureses_from_ancova_md_se
Convert means and 95% CIs of two independent groups obtained from an ANCOVA model into several effect size measureses_from_ancova_means_ci
Convert means and standard deviations of two independent groups obtained from an ANCOVA model into several effect size measureses_from_ancova_means_sd
Convert means and adjusted pooled standard deviation of two independent groups obtained from an ANCOVA model into several effect size measureses_from_ancova_means_sd_pooled_adj
Convert adjusted means obtained from an ANCOVA model and crude pooled standard deviation of two independent groups into several effect size measureses_from_ancova_means_sd_pooled_crude
Convert means and standard errors of two independent groups obtained from an ANCOVA model into several effect size measureses_from_ancova_means_se
Convert a t-statistic obtained from an ANCOVA model into several effect size measures.es_from_ancova_t
Convert a two-tailed p-value of an ANCOVA t-test into several effect size measures.es_from_ancova_t_pval
Convert a one-way independent ANOVA F-value to several effect size measureses_from_anova_f
Convert a p-value from a one-way independent ANOVA to several effect size measureses_from_anova_pval
Convert a standardized regression coefficient and the standard deviation of the dependent variable into several effect size measureses_from_beta_std
Convert an unstandardized regression coefficient and the standard deviation of the dependent variable into several effect size measureses_from_beta_unstd
Convert the number of cases and the person-time of disease-free observation in two independent groups into an incidence rate ratio (IRR)es_from_cases_time
Convert a chi-square value to several effect size measureses_from_chisq
Convert a p-value of a chi-square to several effect size measureses_from_chisq_pval
Convert a Cohen's d value to several effect size measureses_from_cohen_d
Convert an adjusted Cohen's d value to several effect size measureses_from_cohen_d_adj
Convert an eta-squared value to various effect size measureses_from_etasq
Convert an adjusted eta-squared value (i.e., from an ANCOVA) to various effect size measureses_from_etasq_adj
Convert a Fisher's z (r-to-z transformation) to several effect size measureses_from_fisher_z
Convert a Hedges' g value to other effect size measures (G, OR, COR)es_from_hedges_g
Convert a mean difference between two independent groups and 95% CI into several effect size measureses_from_md_ci
Convert a mean difference between two independent groups and its p-value into several effect size measureses_from_md_pval
Convert a mean difference between two independent groups and standard deviation into several effect size measureses_from_md_sd
Convert a mean difference between two independent groups and its standard error into several effect size measureses_from_md_se
Convert mean changes and standard deviations of two independent groups into standard effect size measureses_from_mean_change_ci
Convert mean changes and standard deviations of two independent groups into standard effect size measureses_from_mean_change_pval
Convert mean changes and standard deviations of two independent groups into standard effect size measureses_from_mean_change_sd
Convert mean changes and standard errors of two independent groups into standard effect size measureses_from_mean_change_se
Convert means and 95% CI of two independent groups several effect size measureses_from_means_ci
Convert pre-post means of two independent groups into various effect size measureses_from_means_ci_pre_post
Convert means and standard deviations of two independent groups into several effect size measureses_from_means_sd
Convert means of two groups and the pooled standard deviation into several effect size measureses_from_means_sd_pooled
Convert pre-post means of two independent groups into various effect size measureses_from_means_sd_pre_post
Convert means and standard errors of two independent groups several effect size measureses_from_means_se
Convert pre-post means of two independent groups into various effect size measureses_from_means_se_pre_post
Convert median, quartiles, and range of two independent groups into several effect size measureses_from_med_min_max
Convert median, range and interquartile range of two independent groups into several effect size measureses_from_med_min_max_quarts
Convert median and interquartile range of two independent groups into several effect size measureses_from_med_quarts
Convert an odds ratio value to several effect size measureses_from_or
Convert an odds ratio value and its 95% confidence interval to several effect size measureses_from_or_ci
Convert an odds ratio value and its standard error to several effect size measureses_from_or_pval
Convert an odds ratio value and its standard error into several effect size measureses_from_or_se
Convert two paired ANOVA f value of two independent groups into several effect size measureses_from_paired_f
Convert two paired ANOVA f p-value of two independent groups into several effect size measureses_from_paired_f_pval
Convert two paired t-test value of two independent groups into several effect size measureses_from_paired_t
Convert two paired t-test p-value obtained from two independent groups into several effect size measureses_from_paired_t_pval
Convert a Pearson's correlation coefficient to several effect size measureses_from_pearson_r
Convert a phi value to several effect size measureses_from_phi
Converts the means and bounds of an error bar (generally extracted from a plot) into four effect measures (SMD, MD, OR, COR)es_from_plot_ancova_means
Converts the means and bounds of an error bar (generally extracted from a plot) into four effect measures (SMD, MD, OR, COR)es_from_plot_means
Convert a point-biserial correlation coefficient into several effect size measureses_from_pt_bis_r
Convert a p-value of a point-biserial correlation coefficient into several effect size measureses_from_pt_bis_r_pval
Convert a risk ratio value and 95% confidence interval to various effect size measureses_from_rr_ci
Convert a risk ratio value and its p-value to various effect size measureses_from_rr_pval
Convert a risk ratio value and standard error to various effect size measureses_from_rr_se
Convert a Student's t-test value to several effect size measureses_from_student_t
Convert a Student's t-test p-value to several effect size measureses_from_student_t_pval
Directly input an adjusted value + variance of an effect size measurees_from_user_adj
Directly input a value + variance of an effect size measurees_from_user_crude
Titlees_variab_from_means_ci
Convert means and/or standard deviations of two independent groups into two effect measures (VR/CVR)es_variab_from_means_sd
Convert means and/or standard errors of two independent groups into two effect measures (VR/CVR)es_variab_from_means_se
Print a summary of an object of class "metaConvert"print.metaConvert
Overview of effect size measures generated from each type of input datasee_input_data
Synthesize information of an object of class "metaConvert" into a dataframesummary.metaConvert